PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P17840_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 388aa    MW: 42045.3 Da    PI: 7.4548
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P17840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP85.11.7e-261672489
                    TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89
                           ++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s+++
  GSMUA_Achr6P17840_001  1 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSSFSAPA 67
                           9**********************************************99976666666666333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.411139IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-26177IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNISLRSSG  60
SSFSAPASKS APLSFHALAL AHHRPDFELH QLLSADQIGE GLQGGVGSGG GDSTDTYLRK  120
RFRGDLFKDE QQTPPQHQEG GGGAGPSPPG ILPAAAMWAV APNSAAGGAF WMLPMSAGSA  180
APAVAAATGT IQAPLQFMSR QPTSGVAAQH LGLGTSETNL GMLAALNAYN RGGGLSMNSE  240
HHHPMDHHHQ AHTHQQQQSA DSDEDNHTMF FQLVKEYFHR FSFFYFCSIL LECCDFKNLI  300
CGSKWAARVG NKDLYRDPIR LCSIILCLFE REREREREEE RGQYTVCRCS PIKAISGRTF  360
LIRIVRGRTR GEGPCSSDPS HHVVSARR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642403e-40AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035133e-40AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035693e-40AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149623e-40AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126143e-40CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404879.11e-114PREDICTED: transcription factor TCP8-like
SwissprotQ9C5185e-51TCP8_ARATH; Transcription factor TCP8
TrEMBLM0T7Y20.0M0T7Y2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P17840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-30TCP family protein